Interesting premise. Let's say Jordan gets to pick his entire team first, then you get to pick a team to beat them. Everyone in their primes.
Magic
Jordan
Pippen
Worthy
Hakeem.
Frankly, that's a beatable team in an all-time respect. A little weak up front and limited due to sentimentality. Pippen is great, but there are better players than him. Worthy is a clear step below the conversation, really leaving the door open. Advantages are Magic as greatest PG ever and Jordan as probable GOAT.
But there are several ways to beat them. They are small up front, and, in the context of an all-time conversation, give up a bit at the SF/PF spot. They really lack three point shooting when considering the advancing skill levels of modern players, and lack the size to really make up for the lack of spacing due to the lack of 3 point range.
I'd try to create a great across the board team without true positions but ball-sharers. Strict positions are less important when talking about all-timers.
Counter Magic with Lebron. Lebron basically as good as Magic on offense but plays a little different style as a SF/PF rather than PG so less assists. But better shooter and post player, and much better defender.
SG I'm going to bypass Kobe. Overrated, gets too much credit for Shaq's success. Too inefficient to be in the true elite discussion, too much hero ball for this type of team without the real jordan-esque skill to back that up. Not nearly as good as jordan but could think he is and sink the team trying to go 1 v 1.
So eliminating Kobe, the choice is hard. Tempted to go with range to really drive home the spacing and continue to punish Jordan's team with Bron/Bird/KG/Duncan in the post. If that's the case you take Ray; Miller's overrated and about 2 steps below Ray in terms of sharing the ball and rebounding. Ray an underrated all-around player in his prime. But he lacks some defense. Tempted to go Drexler, logic being great all-around 2 guard; if he can take the Jordan challenge and play him to 80% of a draw, I take the advantage at the other positions and win. Fantastic all-around player; lacking elite range. Even more tempted to go unconventional and go with Payton; he could be PG on offense, but stick with Jordan on defense. Got the size to really bother him (as much as anyone could), and obviously greatest PG defender of all time. Really intriguing and tempting. But sticking with unconventional, i'm going Havlicek. All-time great 2 way player. Great distributor/ball mover. Elite all time player; at his peak a 20/7/6 per 36 minute kind of player. Definitely makes Jordan work on D. And here's the kicker: unlike my other tempting SGs, Havlicek was all-defense 1st or 2nd team 8 times. Really makes Jordan work on both ends of the floor more than anyone (except maybe the Payton/Lebron combo swap), and a phenomenal team player on offense.
Bird at SF; gives up some on D, but keeps the great team ball movement going, adds range and elite rebounding at the 3.
PF/C is really actually hard. I'd probably actually go with KG and Duncan for this purpose. Holy cow. Duncan can handle Hakeem, probably battle him to a draw 1 on 1. KG owns Worthy, and, in his prime, was basically the pinnacle of team-D, ball handling, ball movement, all-around PF. Just incredible big man passing with that duo, and since Jordan goes small, you don't miss the bulk you normally would with a KG/TD duo. Duncan and KG can play low, taking advantage of the Worthy/Hakeem frontcourt, but also have elite PF/C range to draw each of those away so the other guy can post up. Not only that, but both can draw both their guys out, allowing the Bird/Lebron post-up on Pippen/Magic. Bird and Lebron in the post vs a SF and PG?!?!? I'll take it.
So there we go. Versatile, and an absolute defensive menace. Distributors at every position. No ball stoppers, a team of players who love to pass and all comfortable initiating the offense. Everyone can play inside or outside. 4/5 of the team spending the better part of a decade each on an all-defensive team (counting Lebron, at 5 and still in his prime), and even Bird, the weak defensive link, was on 3 2nd teams. Size advantage almost across the board with range advantage also across the board. I'd take that team in a 7 game series.
Final Roster:
Lebron
Havlicek
Bird
KG
Duncan