I can't think of many Tom Cruise movies I *didn't* like. I really liked both Eyes Wide Shut and Vanilla Skye, and Valkyrie was really good, I thought. Magnolia, Minority Report, War of the Worlds... all were good, I thought. Born on the Fourth of July, Far and Away, Days of Thunder, even Cocktail... I like all of these movies.
I wasn't a huge fan of The Firm, and Tropic Thunder wasn't that great, in my opinion (and he was good in his role). Those are the only Cruise movies I didn't really care for, off the top of my head.